Phytophthora ×stagnum
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Phytophthora spp. in subclade 6b: portion of the seven-loci ML phylogeny featuring the type cultures of 212 described species (by T. Bourret). Notice the position of P. ×stagnum Ex-type MYA-4926. Gloria Abad, USDA S&T.
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Phytophthora spp. in subclade 6b: Morphological Tabular key (PDF) and Tabular key legends (PDF) in IDphy2 KEY SECTION. Notice the data of P. ×stagnum Ex-type MYA-4926. Gloria Abad, USDA S&T.
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Name and publication
Phytophthora ×stagnum X. Yang & C. X. Hong
Nomenclature
from Yang et al. 2014
Mycobank
Etymology
‘stagnum’ refers to the irrigation reservoirs where this novel hybrid species was recovered.
Typification
Type: UNITED STATES OF AMERICA,
recovered from an irrigation runoff reservoir, Virginia, January, 2007 ATCC MYA-4926.
Ex-type: 43F3.
Sequences for ex-type in original manuscript:
Phytophthora x stagnum 43 F3: ITS rDNA KJ705084, KJ705085, KJ705086. Cox 1: KC631619. B-tubulin KJ883155.
Ex-type in other collections
(ET) ATCC MYA-4926 (MCI), 43F3 (Hong)
Molecular identification
Voucher sequences for barcoding genes (ITS rDNA and COI) of the ex-type (see Molecular protocols page)
Phytophthora ×stagnum ITS rDNA, COI
Voucher sequences for Molecular Toolbox with seven genes (ITS, β-tub, COI, EF1α, HSP90, L10, and YPT1
(see Molecular protocols page) (In Progress)
Voucher sequences for Metabarcoding High-throughput Sequencing (HTS) Technologies [Molecular Operational Taxonomic Unit (MOTU)]
(see Molecular protocols page) (In Progress)
Sequences with multiple genes for ex-type in other sources
- NCBI: Phytophthora ×stagnum
- EPPO-Q-bank: Phytophthora ×stagnum
- BOLDSYSTEMS: Phytophthora ×stagnum
Position in multigenic phylogeny with 7 genes (ITS, β-tub, COI, EF1α, HSP90, L10, and YPT1)
Clade clade:
a taxonomic group of organisms classified together on the basis of homologous features traced to a common ancestor
6b
Hosts and distribution
N/A
Retrieved from U.S. National Fungus Collections Nomenclature Database
Additional references and links
- SMML USDA-ARS: Phytophthora ×stagnum
- EPPO Global Database: Phytophthora ×stagnum
- Forest Phytophthoras of the world: Phytophthora ×stagnum
- CABI Digital Library: Phytophthora ×stagnum
- Encyclopedia of Life (EOL): Phytophthora × stagnum
- Index Fungorum (IF): Phytophthora ×stagnum
Fact sheet author:
Z. Gloria Abad, Ph.D., USDA-APHIS-PPQ-S&T Plant Pathogen Confirmatory Diagnostics Laboratory (PPCDL), United States of America.
