Name and publication

Phytophthora pseudopolonica Li, Huai, and Zhao (2017)

Phytophthora  pseudopolonica W.W. Li, W.X. Huai & W.X. Zhao ex Abad & B. Kasiborski sp. nov. (2023) 

Li W, Zhao W, and Hua W. 2017. Phytophthora pseudopolonica sp. nov., a new species recovered from stream water in subtropical forests of China. Int. J. Syst. Evol. Microbiol. 67: 3666–3675.

Nomenclature

from Li et al. (2017)

Mycobank

MB820722

MB844808

Etymology

refers to the similar ITS sequence with Phytophthora polonica

Typification

Type: CHINA recovered from stream water in Xichang, Sichuan isolate LS06.3.2T deposited in the CBS Fungal Biodiversity Centre, Utrecht, The Netherlands, as CBS 142610T, and China Forestry Culture Collection Centre, Beijing, PR China, as CFCC 51826T (three types: invalid species)

Original manuscript describes: The type isolate LS06.3.2T, recovered from stream water in Xichang, Sichuan province of China, has been deposited in the CBS Fungal Biodiversity Centre, Utrecht, The Netherlands, as CBS 142610T and China Forestry Culture Collection Centre, Beijing, PR China, as CFCC 51826T. GenBank accession numbers of ITS, β-tubulin and elongation factor 1a KY707104, KY787198, and KY707115. 

Mistake in the manuscript: In NCBI, KY707104 corresponds to Phytophthora sp. isolate LS06.3.2 β-tubulin gene, partial cds. KY787198 Phytophthora sp. isolate LS06.3.2 translation elongation factor 1-α gene, partial cds. KY707115 Phytophthora sp. isolate LS06.3.2 internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.

Correct sequences for ex-type : ITS rDNA KY707115, β-tubulin KY707104 and translation elongation factor KY787198 (submitted as Phytophthora sp. isolate LS06.3.2)

Selected specimen in other collections

(SE) CBS 142610, NRRL 64333, S&T BL 221 (Abad), LS06.3.2

Molecular identification

Voucher sequences for barcoding genes (ITS rDNA and COI) of the selected specimen (see Molecular protocols page)

Phytophthora pseudopolonica ITS rDNA, COI

Voucher sequences for Molecular Toolbox with seven genes (ITS, β-tub, COI, EF1α, HSP90, L10, and YPT1

(see Molecular protocols page) (In Progress)

Voucher sequences for Metabarcoding High-throughput Sequencing (HTS) Technologies [Molecular Operational Taxonomic Unit (MOTU)]

(see Molecular protocols page) (In Progress)

Sequences with multiple genes for selected specimen in other sources

• NCBI: Phytophthora pseudopolonica
• EPPO-Q-bank: Phytophthora pseudopolonica
• BOLDSYSTEMS: Phytophthora pseudopolonica

Position in multigenic phylogeny with 7 genes (ITS, β-tub, COI, EF1α, HSP90, L10, and YPT1)

Clade clade:
a taxonomic group of organisms classified together on the basis of homologous features traced to a common ancestor
9b

Additional references and links

• SMML USDA-ARS: Phytophthora psuedopolonica
• EPPO Global Database: Phytophthora psuedopolonica
• Forest Phytophthoras of the world: Phytophthora psuedopolonica
• CABI Digital Library: Phytophthora psuedopolonica
• Encyclopedia of Life (EOL): Phytophthora psuedopolonica
• Index Fungorum (IF): Phytophthora psuedopolonica

Fact sheet author

Z. Gloria Abad, Ph.D., USDA-APHIS-PPQ-S&T Plant Pathogen Confirmatory Diagnostics Laboratory (PPCDL), United States of America.